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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 257

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 488 112

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 399 69

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 407 75

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 330 41

Repositories

Showing 10 of 253 repositories
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 60 BSD-3-Clause 6 5 2 Updated Feb 26, 2026
  • DRVI_tutorials Public

    All the official tutorials for DRVI

    theislab/DRVI_tutorials’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Feb 26, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Feb 26, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 13 Apache-2.0 2 5 4 Updated Feb 26, 2026
  • cellucid Public

    See every cell. Query any gene. Fly through millions. Zero friction.

    theislab/cellucid’s past year of commit activity
    JavaScript 3 BSD-3-Clause 0 0 0 Updated Feb 25, 2026
  • scvelo Public

    RNA Velocity generalized through dynamical modeling

    theislab/scvelo’s past year of commit activity
    Python 488 BSD-3-Clause 112 71 5 Updated Feb 25, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 22 MIT 4 0 0 Updated Feb 25, 2026
  • prophet Public
    theislab/prophet’s past year of commit activity
    Python 38 MIT 3 6 0 Updated Feb 24, 2026
  • CellFlow2 Public

    Modeling complex perturbations with CellFlow

    theislab/CellFlow2’s past year of commit activity
    Python 9 2 0 0 Updated Feb 24, 2026
  • scRatio Public
    theislab/scRatio’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Feb 24, 2026
View all repositories